PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0053s0053.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 654aa    MW: 70290.7 Da    PI: 7.1326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0053s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06608631326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++ C +f     C+ G++C F+H+
  Sphfalx0053s0053.1.p 608 RKACIYFNTAKGCRNGSSCVFIHD 631
                           678********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.08605633IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4608631IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4609632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MATASLPPGF GGALMGLPAD HMGHSKPPHL HHHHHHHHLL QARVSKKVSW AAGDRLCQVR  60
LFAAEDAPDS SGTARQDLLQ AKQTKFMHAT VPISSNALPP GFTPTATMGT KPAVGAVLPQ  120
VPWRVPTLFN LHPSWRVVAG GESKEVALQR QREVRVLEAV YPRTSSIPES PAEPLEPQLP  180
CNDEMTVVIP VVPVDDDTLD QDDGLTSTVD KLHFPQESAA KEGALSPPPG FGFVAKEPNP  240
VLANWLAGAY QDNDRARGHA DSKGSHLGIT APAGSIMSGI GNISSFNPDQ SRSDPSSKPS  300
LPAVPPSCQT ETEPDVIAAA AAAYAALSQS NDHTKIDCGL LLKFLRNPSM MKNVSSQLSS  360
KDSVENRVYE VSNLGTEGTR IGNGNQQDPA AISFPVLSIE QELLHGGGDI GRTERKTSVE  420
AGGAPMDVVF ERSQGFGPAQ ATNGHDNFPV TFNARVYNGP MHTSQPHVAQ NGQLYIPATR  480
PTSAQLHPPL SVPPPAPQPV MPISGRPLSQ HDEQYLKDLI LQHGRNSSED DVHRGMNGRV  540
QEYNVLSTNG HYRTTSFTGQ SERLESAPMW PGKEYIDIAN LSLRLGDGHR NVESISRSGM  600
TQPRGKSRKA CIYFNTAKGC RNGSSCVFIH DSNNVERAKW QKVDGGKAES GYK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-